PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G08720.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 254aa    MW: 28223.6 Da    PI: 5.0711
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G08720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM116.52.6e-36121441128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      +ppGfrF+Ptde+lv +yL+++++++++ +   i+++d+y+v+Pw+Lp +++++++++ yfF+++++++    +++r+t sg+Wk tg++k+++
  OGLUM02G08720.1  12 MPPGFRFQPTDEQLVIDYLQRRTAAQPCVT-PDITDIDVYNVDPWQLPaMAMYGSDHDRYFFTTAAREA----QARRTTPSGFWKPTGTKKTIF 100
                      79*************************988.55***************778888999*******99875....7899****************9 PP

              NAM  94 sk...kgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                           ++  + +k+ ++fy      +g++++ +kt+W+mhey+l
  OGLUM02G08720.1 101 IVaggHEVPTAVKRRFIFYlghhqpSGSSSNNNKTSWIMHEYHL 144
                      9876666669*********88887778899999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-414179IPR003441NAC domain
PROSITE profilePS5100540.60812179IPR003441NAC domain
PfamPF023652.0E-2113144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAMTPQLAFS RMPPGFRFQP TDEQLVIDYL QRRTAAQPCV TPDITDIDVY NVDPWQLPAM  60
AMYGSDHDRY FFTTAAREAQ ARRTTPSGFW KPTGTKKTIF IVAGGHEVPT AVKRRFIFYL  120
GHHQPSGSSS NNNKTSWIMH EYHLMNPPRA AAVPSSSSVN PLPTDDLTEE MVLCRISNKD  180
LPKPPYIHNG LLQFSSVGLN GDGYNYLILD HLEPPAMEYP NVGIGNVDDA AAGTDDPGDL  240
DEEIDDSMQR NHGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B1e-281217917165NAC domain-containing protein 19
4dul_A1e-281217917165NAC domain-containing protein 19
1ut7_B1e-281217917165NO APICAL MERISTEM PROTEIN
1ut7_A1e-281217917165NO APICAL MERISTEM PROTEIN
1ut4_B1e-281217917165NO APICAL MERISTEM PROTEIN
1ut4_A1e-281217917165NO APICAL MERISTEM PROTEIN
3swp_D1e-281217920168NAC domain-containing protein 19
3swp_C1e-281217920168NAC domain-containing protein 19
3swp_B1e-281217920168NAC domain-containing protein 19
3swp_A1e-281217920168NAC domain-containing protein 19
3swm_D1e-281217920168NAC domain-containing protein 19
3swm_C1e-281217920168NAC domain-containing protein 19
3swm_B1e-281217920168NAC domain-containing protein 19
3swm_A1e-281217920168NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1072830.0AK107283.1 Oryza sativa Japonica Group cDNA clone:002-126-B03, full insert sequence.
GenBankEF1224790.0EF122479.1 Oryza sativa (japonica cultivar-group) clone KCS348H05 NAC6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625739.10.0PREDICTED: NAC domain-containing protein 48-like
TrEMBLA0A0D9YP920.0A0A0D9YP92_9ORYZ; Uncharacterized protein
STRINGLOC_Os02g12310.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165401213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.11e-30NAC domain containing protein 32